IL_4WQR_308

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_308 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1835

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4WQR|1|1H|U|1357
4WQR|1|1H|G|1358
4WQR|1|1H|A|1359
4WQR|1|1H|A|1360
4WQR|1|1H|G|1361
*
4WQR|1|1H|C|1370
4WQR|1|1H|G|1371
4WQR|1|1H|U|1372
4WQR|1|1H|A|1373
4WQR|1|1H|G|1374

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain J8

50S ribosomal protein L28

Chain P8

50S ribosomal protein L34