IL_4WQR_316

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

4WQR|1|1H|A|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_316 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.5588

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4WQR|1|1H|U|1482
4WQR|1|1H|G|1483
*
4WQR|1|1H|C|1506
4WQR|1|1H|A|1507
4WQR|1|1H|A|1508
4WQR|1|1H|C|1509
4WQR|1|1H|A|1510
4WQR|1|1H|A|1511
4WQR|1|1H|G|1512

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains