IL_4WQR_330

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_330 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1061

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4WQR|1|1H|G|1856
4WQR|1|1H|G|1857
4WQR|1|1H|G|1858
4WQR|1|1H|A|1859
4WQR|1|1H|G|1860
*
4WQR|1|1H|C|1882
4WQR|1|1H|G|1883
4WQR|1|1H|A|1884
4WQR|1|1H|A|1885
4WQR|1|1H|C|1886

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA

Chain J8

50S ribosomal protein L28