IL_4WQU_013

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4WQU|1|AA|U|529, 4WQU|1|AA|G|533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_013 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0431

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4WQU|1|AA|G|507
4WQU|1|AA|A|508
4WQU|1|AA|A|509
4WQU|1|AA|C|510
*
4WQU|1|AA|G|521
4WQU|1|AA|A|522
4WQU|1|AA|G|523
4WQU|1|AA|U|524
4WQU|1|AA|G|525
4WQU|1|AA|A|526
4WQU|1|AA|A|527
4WQU|1|AA|A|528
4WQU|1|AA|U|529
4WQU|1|AA|A|530
4WQU|1|AA|G|531
4WQU|1|AA|A|532
4WQU|1|AA|G|533
4WQU|1|AA|C|534

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AW

50S ribosomal protein L22

Chain AY

50S ribosomal protein L24