IL_4WQU_018

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4WQU|1|AA|G|848, 4WQU|1|AA|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_018 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0536

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|AA|G|721
4WQU|1|AA|A|722
4WQU|1|AA|A|723
4WQU|1|AA|A|724
4WQU|1|AA|C|725
*
4WQU|1|AA|G|846
4WQU|1|AA|A|847
4WQU|1|AA|G|848
4WQU|1|AA|A|849
4WQU|1|AA|U|850
4WQU|1|AA|A|851
4WQU|1|AA|G|852
4WQU|1|AA|C|853

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AP

50S ribosomal protein L15