IL_4WQU_036

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases (A, C, G, U)

1041C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_036 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.0694

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4WQU|1|AA|C|1040
4WQU|1|AA|C|1041
4WQU|1|AA|A|1042
*
4WQU|1|AA|U|1205
4WQU|1|AA|G|1206

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L30

Chain AN

50S ribosomal protein L13

Chain AU

50S ribosomal protein L20

Chain AV

50S ribosomal protein L21