IL_4WQU_049

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4WQU|1|AA|U|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_049 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.048

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4WQU|1|AA|C|1253
4WQU|1|AA|G|1254
4WQU|1|AA|A|1255
4WQU|1|AA|U|1256
4WQU|1|AA|G|1257
4WQU|1|AA|A|1258
4WQU|1|AA|A|1259
4WQU|1|AA|G|1260
*
4WQU|1|AA|U|1280
4WQU|1|AA|G|1281
4WQU|1|AA|G|1282
4WQU|1|AA|A|1283
4WQU|1|AA|G|1284

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L20