IL_4WQU_063

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

4WQU|1|AA|C|1555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_063 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.218

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4WQU|1|AA|U|1528
4WQU|1|AA|G|1529
*
4WQU|1|AA|C|1552
4WQU|1|AA|A|1553
4WQU|1|AA|A|1554
4WQU|1|AA|C|1555
4WQU|1|AA|A|1556
4WQU|1|AA|A|1557
4WQU|1|AA|G|1558

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains