IL_4WQU_065

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4WQU|1|AA|C|1590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_065 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0701

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4WQU|1|AA|G|1572
4WQU|1|AA|G|1573
4WQU|1|AA|A|1574
4WQU|1|AA|A|1575
4WQU|1|AA|G|1576
*
4WQU|1|AA|U|1587
4WQU|1|AA|G|1588
4WQU|1|AA|A|1589
4WQU|1|AA|C|1590
4WQU|1|AA|A|1591
4WQU|1|AA|A|1592
4WQU|1|AA|C|1593

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains