IL_4WQU_069

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4WQU|1|AA|G|2014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_069 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.0509

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4WQU|1|AA|A|1716
4WQU|1|AA|C|1717
4WQU|1|AA|U|1718
4WQU|1|AA|C|1719
4WQU|1|AA|U|1720
4WQU|1|AA|G|1721
*
4WQU|1|AA|C|2012
4WQU|1|AA|U|2013
4WQU|1|AA|G|2014
4WQU|1|AA|U|2015

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AO

50S ribosomal protein L14