IL_4WQU_077

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_077 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1046

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4WQU|1|AA|G|1887
4WQU|1|AA|G|1888
4WQU|1|AA|G|1889
4WQU|1|AA|A|1890
4WQU|1|AA|G|1891
*
4WQU|1|AA|C|1904
4WQU|1|AA|G|1905
4WQU|1|AA|A|1906
4WQU|1|AA|A|1907
4WQU|1|AA|C|1908

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AC

50S ribosomal protein L1

Chain BY

Transfer RNA; tRNA