IL_4WQU_079

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4WQU|1|AA|A|1960, 4WQU|1|AA|U|1966, 4WQU|1|AA|U|1985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_079 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.114

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4WQU|1|AA|C|1956
4WQU|1|AA|G|1957
4WQU|1|AA|A|1958
4WQU|1|AA|A|1959
4WQU|1|AA|A|1960
4WQU|1|AA|U|1961
4WQU|1|AA|U|1962
4WQU|1|AA|C|1963
4WQU|1|AA|C|1964
4WQU|1|AA|U|1965
4WQU|1|AA|U|1966
4WQU|1|AA|G|1967
*
4WQU|1|AA|C|1983
4WQU|1|AA|C|1984
4WQU|1|AA|U|1985
4WQU|1|AA|G|1986

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA