IL_4WQU_084

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

4WQU|1|AA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_084 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.0551

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4WQU|1|AA|C|2103
4WQU|1|AA|A|2104
4WQU|1|AA|G|2105
*
4WQU|1|AA|C|2248
4WQU|1|AA|G|2249
4WQU|1|AA|G|2250
4WQU|1|AA|G|2251

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AD

50S ribosomal protein L2