IL_4WQU_089

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4WQU|1|AA|G|2138, 4WQU|1|AA|A|2141

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_089 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.2873

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4WQU|1|AA|G|2132
4WQU|1|AA|C|2133
4WQU|1|AA|G|2134
4WQU|1|AA|U|2135
4WQU|1|AA|A|2136
4WQU|1|AA|G|2137
4WQU|1|AA|G|2138
4WQU|1|AA|A|2139
4WQU|1|AA|U|2140
4WQU|1|AA|A|2141
4WQU|1|AA|G|2142
*
4WQU|1|AA|C|2200
4WQU|1|AA|C|2201

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1

Chain BY

Transfer RNA; tRNA