IL_4WQU_101

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_101 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.0646

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4WQU|1|AA|C|2478
4WQU|1|AA|C|2479
4WQU|1|AA|G|2480
4WQU|1|AA|A|2481
4WQU|1|AA|G|2482
*
4WQU|1|AA|C|2492
4WQU|1|AA|G|2493
4WQU|1|AA|G|2494
4WQU|1|AA|C|2495
4WQU|1|AA|G|2496

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A9

50S ribosomal protein L36

Chain AQ

50S ribosomal protein L16

Chain AZ

50S ribosomal protein L25