IL_4WQU_105

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

4WQU|1|AA|A|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_105 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.071

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4WQU|1|AA|U|2534
4WQU|1|AA|G|2535
*
4WQU|1|AA|C|2552
4WQU|1|AA|A|2553
4WQU|1|AA|A|2554
4WQU|1|AA|G|2555

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A9

50S ribosomal protein L36

Chain AN

50S ribosomal protein L13