IL_4WQU_108

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4WQU|1|AA|G|2793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_108 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0471

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4WQU|1|AA|U|2648
4WQU|1|AA|U|2649
4WQU|1|AA|G|2650
4WQU|1|AA|A|2651
4WQU|1|AA|G|2652
*
4WQU|1|AA|C|2787
4WQU|1|AA|A|2788
4WQU|1|AA|A|2789
4WQU|1|AA|G|2790
4WQU|1|AA|A|2791
4WQU|1|AA|U|2792
4WQU|1|AA|G|2793
4WQU|1|AA|A|2794
4WQU|1|AA|G|2795

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AN

50S ribosomal protein L13