IL_4WQU_109

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_109 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.0642

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|AA|C|2664
4WQU|1|AA|U|2665
4WQU|1|AA|A|2666
4WQU|1|AA|G|2667
4WQU|1|AA|U|2668
4WQU|1|AA|A|2669
4WQU|1|AA|C|2670
*
4WQU|1|AA|G|2675
4WQU|1|AA|G|2676
4WQU|1|AA|A|2677
4WQU|1|AA|C|2678
4WQU|1|AA|C|2679
4WQU|1|AA|G|2680

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L6

Chain BZ

50S ribosomal protein L9,Elongation factor G