IL_4WQU_116

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_116 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0677

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|AA|U|2857
4WQU|1|AA|G|2858
4WQU|1|AA|U|2859
4WQU|1|AA|A|2860
4WQU|1|AA|A|2861
4WQU|1|AA|G|2862
*
4WQU|1|AA|U|2875
4WQU|1|AA|U|2876
4WQU|1|AA|G|2877
4WQU|1|AA|A|2878
4WQU|1|AA|G|2879

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AR

50S ribosomal protein L17

Chain AT

50S ribosomal protein L19

Chain BA

Small subunit ribosomal RNA; SSU rRNA