IL_4WQU_142

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_142 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1546

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4WQU|1|BA|G|450
4WQU|1|BA|A|451
4WQU|1|BA|A|452
4WQU|1|BA|A|453
4WQU|1|BA|C|454
4WQU|1|BA|C|455
*
4WQU|1|BA|G|476
4WQU|1|BA|A|477
4WQU|1|BA|C|479
4WQU|1|BA|U|480
4WQU|1|BA|G|481
4WQU|1|BA|A|482
4WQU|1|BA|C|483

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16