IL_4WQU_162

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGG*CACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_162 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.2995

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4WQU|1|BA|U|952
4WQU|1|BA|G|953
4WQU|1|BA|G|954
*
4WQU|1|BA|C|1226
4WQU|1|BA|A|1227
4WQU|1|BA|C|1228
4WQU|1|BA|A|1229

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BM

30S ribosomal protein S13

Chain BS

30S ribosomal protein S19

Chain BW

Transfer RNA; tRNA