IL_4WQU_173

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_173 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2411

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4WQU|1|BA|G|1124
4WQU|1|BA|U|1125
4WQU|1|BA|U|1126
4WQU|1|BA|G|1127
*
4WQU|1|BA|C|1145
4WQU|1|BA|A|1146
4WQU|1|BA|C|1147
4WQU|1|BA|U|1148
4WQU|1|BA|C|1149

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S9

Chain BJ

30S ribosomal protein S10