3D structure

PDB id
4WQU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
UGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WQU_207 not in the Motif Atlas
Geometric match to IL_7RQB_021
Geometric discrepancy: 0.0596
The information below is about IL_7RQB_021
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_56467.8
Basepair signature
cWW-tSH-tSH-tHS-cWW
Number of instances in this motif group
29

Unit IDs

4WQU|1|CA|U|703
4WQU|1|CA|G|704
4WQU|1|CA|A|705
4WQU|1|CA|A|706
4WQU|1|CA|G|707
*
4WQU|1|CA|U|724
4WQU|1|CA|G|725
4WQU|1|CA|G|726
4WQU|1|CA|A|727
4WQU|1|CA|G|728

Current chains

Chain CA
23S Ribosomal RNA

Nearby chains

Chain CD
50S ribosomal protein L2

Coloring options:


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