IL_4WQU_214

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_214 not in the Motif Atlas

Geometric match to IL_7RQB_027

Geometric discrepancy: 0.1153

The information below is about IL_7RQB_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.1

Basepair signature

cWW-L-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WQU|1|CA|U|858
4WQU|1|CA|G|859
4WQU|1|CA|U|860
4WQU|1|CA|A|861
4WQU|1|CA|G|862
*
4WQU|1|CA|C|915
4WQU|1|CA|G|916
4WQU|1|CA|A|917
4WQU|1|CA|A|918
4WQU|1|CA|G|919

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C0

50S ribosomal protein L27

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CQ

50S ribosomal protein L16