IL_4WQU_229

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_229 not in the Motif Atlas

Geometric match to IL_1Z7F_001

Geometric discrepancy: 0.1785

The information below is about IL_1Z7F_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

4WQU|1|CA|C|1041
4WQU|1|CA|G|1042
4WQU|1|CA|C|1043
*
4WQU|1|CA|G|1112
4WQU|1|CA|U|1113
4WQU|1|CA|G|1114

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CH

50S ribosomal protein L6

Chain CK

50S ribosomal protein L10

Chain CZ

50S ribosomal protein L25