IL_4WQU_239

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_239 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.0483

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4WQU|1|CA|G|1319
4WQU|1|CA|C|1320
4WQU|1|CA|A|1321
4WQU|1|CA|A|1322
4WQU|1|CA|U|1323
*
4WQU|1|CA|A|1331
4WQU|1|CA|G|1332
4WQU|1|CA|C|1333

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CW

50S ribosomal protein L22

Chain CX

50S ribosomal protein L23