IL_4WQU_241

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_241 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1119

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4WQU|1|CA|U|1357
4WQU|1|CA|G|1358
4WQU|1|CA|A|1359
4WQU|1|CA|A|1360
4WQU|1|CA|G|1361
*
4WQU|1|CA|C|1370
4WQU|1|CA|G|1371
4WQU|1|CA|U|1372
4WQU|1|CA|A|1373
4WQU|1|CA|G|1374

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L28

Chain C7

50S ribosomal protein L34

Chain CD

50S ribosomal protein L2