IL_4WQU_254

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_254 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.0813

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4WQU|1|CA|G|1666
4WQU|1|CA|G|1667
4WQU|1|CA|A|1668
4WQU|1|CA|A|1669
*
4WQU|1|CA|U|1993
4WQU|1|CA|C|1994

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L3

Chain CO

50S ribosomal protein L14