IL_4WQU_265

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4WQU|1|CA|A|1938, 4WQU|1|CA|U|1944, 4WQU|1|CA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_265 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.116

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4WQU|1|CA|C|1934
4WQU|1|CA|G|1935
4WQU|1|CA|A|1936
4WQU|1|CA|A|1937
4WQU|1|CA|A|1938
4WQU|1|CA|U|1939
4WQU|1|CA|U|1940
4WQU|1|CA|C|1941
4WQU|1|CA|C|1942
4WQU|1|CA|U|1943
4WQU|1|CA|U|1944
4WQU|1|CA|G|1945
*
4WQU|1|CA|C|1961
4WQU|1|CA|C|1962
4WQU|1|CA|U|1963
4WQU|1|CA|G|1964

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA