IL_4WQU_276

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4WQU|1|CA|G|2112, 4WQU|1|CA|G|2116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_276 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.3084

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

4WQU|1|CA|G|2110
4WQU|1|CA|C|2111
4WQU|1|CA|G|2112
4WQU|1|CA|U|2113
4WQU|1|CA|A|2114
4WQU|1|CA|G|2115
4WQU|1|CA|G|2116
4WQU|1|CA|A|2117
4WQU|1|CA|U|2118
4WQU|1|CA|A|2119
4WQU|1|CA|G|2120
*
4WQU|1|CA|C|2178
4WQU|1|CA|C|2179

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L1

Chain DY

Transfer RNA; tRNA