IL_4WQU_295

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4WQU|1|CA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_295 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0542

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4WQU|1|CA|U|2636
4WQU|1|CA|U|2637
4WQU|1|CA|G|2638
4WQU|1|CA|A|2639
4WQU|1|CA|G|2640
*
4WQU|1|CA|C|2774
4WQU|1|CA|A|2775
4WQU|1|CA|A|2776
4WQU|1|CA|G|2777
4WQU|1|CA|A|2778
4WQU|1|CA|U|2779
4WQU|1|CA|G|2780
4WQU|1|CA|A|2781
4WQU|1|CA|G|2782

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L3

Chain CN

50S ribosomal protein L13