IL_4WQU_318

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4WQU|1|DA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_318 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0916

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4WQU|1|DA|G|148
4WQU|1|DA|A|149
4WQU|1|DA|C|150
4WQU|1|DA|A|151
4WQU|1|DA|A|152
4WQU|1|DA|C|153
*
4WQU|1|DA|G|168
4WQU|1|DA|C|169
4WQU|1|DA|U|170
4WQU|1|DA|A|171
4WQU|1|DA|A|172
4WQU|1|DA|U|173
4WQU|1|DA|C|174

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DT

30S ribosomal protein S20