IL_4WQU_332

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4WQU|1|DA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_332 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0854

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

4WQU|1|DA|C|569
4WQU|1|DA|G|570
4WQU|1|DA|U|571
4WQU|1|DA|A|572
4WQU|1|DA|A|573
4WQU|1|DA|A|574
4WQU|1|DA|G|575
*
4WQU|1|DA|C|880
4WQU|1|DA|G|881

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DL

30S ribosomal protein S12

Chain DQ

30S ribosomal protein S17