IL_4WQU_346

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGG*CUU

Length

7 nucleotides

Bulged bases

4WQU|1|DA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_346 not in the Motif Atlas

Geometric match to IL_4P3T_005

Geometric discrepancy: 0.1332

The information below is about IL_4P3T_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

4WQU|1|DA|G|925
4WQU|1|DA|G|926
4WQU|1|DA|G|927
4WQU|1|DA|G|928
*
4WQU|1|DA|C|1389
4WQU|1|DA|U|1390
4WQU|1|DA|U|1391

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DV

mRNA