IL_4WQU_355

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUG*CCC

Length

7 nucleotides

Bulged bases

4WQU|1|DA|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_355 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.3128

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

55

Unit IDs

4WQU|1|DA|G|1047
4WQU|1|DA|G|1048
4WQU|1|DA|U|1049
4WQU|1|DA|G|1050
*
4WQU|1|DA|C|1208
4WQU|1|DA|C|1209
4WQU|1|DA|C|1210

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DN

30S ribosomal protein S14 type Z

Chain DZ

50S ribosomal protein L9,Elongation factor G