IL_4WQU_363

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_363 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.2213

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4WQU|1|DA|C|1242
4WQU|1|DA|C|1243
4WQU|1|DA|C|1244
*
4WQU|1|DA|G|1293
4WQU|1|DA|G|1294
4WQU|1|DA|G|1295

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DG

30S ribosomal protein S7

Chain DI

30S ribosomal protein S9

Chain DM

30S ribosomal protein S13

Chain DU

30S ribosomal protein Thx