IL_4WQU_367

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_367 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1198

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4WQU|1|DA|C|1303
4WQU|1|DA|G|1304
4WQU|1|DA|G|1305
4WQU|1|DA|A|1306
4WQU|1|DA|U|1307
4WQU|1|DA|U|1308
*
4WQU|1|DA|A|1329
4WQU|1|DA|U|1330
4WQU|1|DA|G|1331
4WQU|1|DA|A|1332
4WQU|1|DA|A|1333
4WQU|1|DA|G|1334

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DM

30S ribosomal protein S13

Chain DU

30S ribosomal protein Thx