IL_4WQU_368

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4WQU|1|DA|C|1400, 4WQU|1|DA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_368 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1958

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4WQU|1|DA|C|1399
4WQU|1|DA|C|1400
4WQU|1|DA|G|1401
*
4WQU|1|DA|C|1501
4WQU|1|DA|A|1502
4WQU|1|DA|A|1503
4WQU|1|DA|G|1504

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DV

mRNA

Chain DW

Transfer RNA; tRNA