IL_4WQU_369

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_369 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1268

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99670.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WQU|1|DA|G|1401
4WQU|1|DA|C|1402
4WQU|1|DA|C|1403
4WQU|1|DA|C|1404
*
4WQU|1|DA|G|1497
4WQU|1|DA|U|1498
4WQU|1|DA|A|1499
4WQU|1|DA|A|1500
4WQU|1|DA|C|1501

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain DV

mRNA

Chain DW

Transfer RNA; tRNA