IL_4WQU_378

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_378 not in the Motif Atlas

Homologous match to IL_9DFE_026

Geometric discrepancy: 0.0712

The information below is about IL_9DFE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WQU|1|AA|U|905
4WQU|1|AA|G|906
4WQU|1|AA|U|907
4WQU|1|AA|A|908
4WQU|1|AA|G|909
*
4WQU|1|AA|C|961
4WQU|1|AA|G|962
4WQU|1|AA|A|963
4WQU|1|AA|A|964
4WQU|1|AA|G|965

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L27

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AQ

50S ribosomal protein L16