IL_4WQU_386

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGG*UCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_386 not in the Motif Atlas

Geometric match to IL_8C3A_437

Geometric discrepancy: 0.2463

The information below is about IL_8C3A_437

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

4WQU|1|BA|C|67
4WQU|1|BA|G|68
4WQU|1|BA|G|69
4WQU|1|BA|G|70
*
4WQU|1|BA|U|99
4WQU|1|BA|C|100
4WQU|1|BA|A|101
4WQU|1|BA|G|102

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BT

30S ribosomal protein S20