IL_4WQU_392

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4WQU|1|CA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_392 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1203

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WQU|1|CA|C|844
4WQU|1|CA|G|845
4WQU|1|CA|C|846
4WQU|1|CA|U|847
4WQU|1|CA|G|848
4WQU|1|CA|A|849
4WQU|1|CA|C|850
*
4WQU|1|CA|G|927
4WQU|1|CA|G|928
4WQU|1|CA|U|930
4WQU|1|CA|G|931
4WQU|1|CA|G|932
4WQU|1|CA|A|933
4WQU|1|CA|G|934

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain AP

50S ribosomal protein L15

Chain C3

50S ribosomal protein L30