IL_4WQU_406

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

4WQU|1|AA|A|942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_406 not in the Motif Atlas

Homologous match to IL_9DFE_032

Geometric discrepancy: 0.3166

The information below is about IL_9DFE_032

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4WQU|1|AA|G|927
4WQU|1|AA|G|928
*
4WQU|1|AA|U|941
4WQU|1|AA|A|942
4WQU|1|AA|C|943

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AQ

50S ribosomal protein L16

Chain AZ

50S ribosomal protein L25