IL_4WQU_413

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4WQU|1|CA|U|2130, 4WQU|1|CA|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_413 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4505

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4WQU|1|CA|C|2129
4WQU|1|CA|U|2130
4WQU|1|CA|G|2131
4WQU|1|CA|U|2132
4WQU|1|CA|G|2133
4WQU|1|CA|A|2134
4WQU|1|CA|A|2135
4WQU|1|CA|C|2136
*
4WQU|1|CA|G|2155
4WQU|1|CA|G|2156
4WQU|1|CA|G|2157
4WQU|1|CA|A|2158
4WQU|1|CA|G|2159

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L1