IL_4WQY_041

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAG,CUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_041 not in the Motif Atlas

Geometric match to IL_3GM7_005

Geometric discrepancy: 0.174

The information below is about IL_3GM7_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4WQY|1|AA|C|1099
4WQY|1|AA|A|1100
4WQY|1|AA|G|1101
*
4WQY|1|AA|C|1150
4WQY|1|AA|U|1151
4WQY|1|AA|G|1152

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L10