IL_4WQY_138

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_138 not in the Motif Atlas

Geometric match to IL_4KNQ_003

Geometric discrepancy: 0.196

The information below is about IL_4KNQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4WQY|1|BA|G|502
4WQY|1|BA|C|503
4WQY|1|BA|C|504
*
4WQY|1|BA|G|541
4WQY|1|BA|G|542
4WQY|1|BA|C|543

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12