IL_4WQY_226

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_226 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0491

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4WQY|1|CA|A|1262
4WQY|1|CA|U|1263
4WQY|1|CA|G|1264
4WQY|1|CA|A|1265
4WQY|1|CA|G|1266
4WQY|1|CA|U|1267
4WQY|1|CA|A|1268
4WQY|1|CA|A|1269
*
4WQY|1|CA|U|2011
4WQY|1|CA|G|2012
4WQY|1|CA|A|2013
4WQY|1|CA|A|2014
4WQY|1|CA|A|2015
4WQY|1|CA|U|2016
4WQY|1|CA|U|2017

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L32

Chain CF

50S ribosomal protein L4

Chain CW

50S ribosomal protein L22