IL_4WQY_247

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4WQY|1|CA|G|1801, 4WQY|1|CA|G|1816, 4WQY|1|CA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_247 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0535

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4WQY|1|CA|U|1798
4WQY|1|CA|G|1799
4WQY|1|CA|C|1800
4WQY|1|CA|G|1801
4WQY|1|CA|A|1802
4WQY|1|CA|A|1803
4WQY|1|CA|C|1804
*
4WQY|1|CA|G|1813
4WQY|1|CA|G|1814
4WQY|1|CA|A|1815
4WQY|1|CA|G|1816
4WQY|1|CA|G|1817
4WQY|1|CA|U|1818
4WQY|1|CA|A|1819
4WQY|1|CA|U|1820
4WQY|1|CA|A|1821

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA