IL_4WQY_354

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_354 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3515

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4WQY|1|DA|C|1259
4WQY|1|DA|C|1260
4WQY|1|DA|A|1261
4WQY|1|DA|C|1262
*
4WQY|1|DA|G|1273
4WQY|1|DA|G|1274
4WQY|1|DA|A|1275
4WQY|1|DA|G|1276

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DS

30S ribosomal protein S19

Chain DU

30S ribosomal protein Thx