IL_4WRA_023

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WRA_023 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1128

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4WRA|1|13|G|450
4WRA|1|13|A|451
4WRA|1|13|A|452
4WRA|1|13|A|453
4WRA|1|13|C|454
4WRA|1|13|C|455
*
4WRA|1|13|G|477
4WRA|1|13|A|478
4WRA|1|13|C|479
4WRA|1|13|U|480
4WRA|1|13|G|481
4WRA|1|13|A|482
4WRA|1|13|C|483

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16